TF_ChIP-seq_ENCSR000DNR
TF_ChIP-seq ENCSR000DNR [biosample_summary="Homo sapiens HeLa-S3" and target="NFYB"]
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| Id: | TF_ChIP-seq/ENCSR000DNR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DNR [biosamplesummary="Homo sapiens HeLa-S3" and target="NFYB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN910WMP|/analyses/ENCAN910WMP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN910WMP|/analyses/ENCAN910WMP/} has in progress subobject document {a9c414ad-e646-45f1-a2e5-511e7c5f4797|/documents/a9c414ad-e646-45f1-a2e5-511e7c5f4797/} audit_not_compliant: Processed alignments file {ENCFF996UJT|/files/ENCFF996UJT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9850628 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NFYB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF104PVR|/files/ENCFF104PVR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11493433 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NFYB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF996UJT|/files/ENCFF996UJT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF996UJT|/files/ENCFF996UJT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DNR | float |
TF_ChIP-seq_ENCSR000DNR |
TF_ChIP-seq ENCSR000DNR [biosample_summary="Homo sapiens HeLa-S3" and target="NFYB"]
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[4.01, 581] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF191KVV.bed.gz | 140.61 KB | 4d7225ee039f83a214548460d1c43994 |
| ENCFF191KVV.bed.gz.dvc | 100.0 B | f2ea0f7fa2c48b17848edd5798ad4786 |
| ENCFF191KVV.tabix.bed.gz | 101.1 KB | f7a882a7d5d60154b8aac6f6fe5543c5 |
| ENCFF191KVV.tabix.bed.gz.dvc | 106.0 B | f6a7e51e7d6b03884390096a18e197cd |
| ENCFF191KVV.tabix.bed.gz.tbi | 68.74 KB | 21c03ffe78bc56cc146e8c67017c9fac |
| ENCFF191KVV.tabix.bed.gz.tbi.dvc | 109.0 B | c0b39cb903018065d25d7d0fd4f27dea |
| genomic_resource.yaml | 3.88 KB | a007dadf1cb2b6dedf3baa02c6805d74 |
| genomic_resource_original.yaml | 3.79 KB | fb1efcd6ae24a572e3ae0c9a7e44846f |
| statistics/ |