type: position_score
table:
  filename: ENCFF333PDI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DNO
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DNO [biosample_summary="Homo sapiens GM12878" and target="KAT2A"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DNO [biosample_summary="Homo sapiens GM12878" and target="KAT2A"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: conservative IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN560LJC|/analyses/ENCAN560LJC/} has\
    \ in progress subobject document {36ac3c42-d441-4926-a7b1-f9b1cdf33cb2|/documents/36ac3c42-d441-4926-a7b1-f9b1cdf33cb2/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN560LJC|/analyses/ENCAN560LJC/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF495LKP|/files/ENCFF495LKP/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13350061 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ KAT2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF117AZM|/files/ENCFF117AZM/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13381185 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ KAT2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DNO
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000DNO
    date_created: '2014-02-12T23:28:07.659390+00:00'
    date_released: '2011-10-29'
    submitter_comment: The data quality is too poor for peak analysis for hg19. Not
      enough peaks can be called. The GRCh38 data should also be used with caution.
    target: KAT2A
