TF_ChIP-seq_ENCSR000DND
TF_ChIP-seq ENCSR000DND [biosample_summary="Homo sapiens pancreas tissue male adult (54 years) and male adult (60 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DND [biosamplesummary="Homo sapiens pancreas tissue male adult (54 years) and male adult (60 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) male adult (60 years) output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF861NDU|/files/ENCFF861NDU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN153QZB|/analyses/ENCAN153QZB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_error: Processed alignments file {ENCFF018QYS|/files/ENCFF018QYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3796817 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF753GJH|/files/ENCFF753GJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3806459 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF018QYS|/files/ENCFF018QYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF018QYS|/files/ENCFF018QYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DND | float |
TF_ChIP-seq_ENCSR000DND |
TF_ChIP-seq ENCSR000DND [biosample_summary="Homo sapiens pancreas tissue male adult (54 years) and male adult (60 years)" and target="CTCF"]
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[2.99, 334] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861NDU.bed.gz | 491.45 KB | 250b86d4ed5e1f7de85ef2e062521321 |
| ENCFF861NDU.bed.gz.dvc | 100.0 B | f2b0c6d75ce67a9533240be36cddefc9 |
| ENCFF861NDU.tabix.bed.gz | 382.87 KB | f80e4933cdc6d4de8b9423686f46d693 |
| ENCFF861NDU.tabix.bed.gz.dvc | 106.0 B | c353b8ca481024e9143c0c4501b24455 |
| ENCFF861NDU.tabix.bed.gz.tbi | 228.75 KB | 89a3318ff7e309a128101d5f5208df66 |
| ENCFF861NDU.tabix.bed.gz.tbi.dvc | 110.0 B | ec9cb4116a9c1ddaee3776532fe7f35d |
| genomic_resource.yaml | 3.98 KB | b37e1ea2513eb6a722cea6ece05d4b8c |
| genomic_resource_original.yaml | 3.83 KB | 427ad0e7ef758379bcde64c4cf933e42 |
| statistics/ |