TF_ChIP-seq_ENCSR000DMR
TF_ChIP-seq ENCSR000DMR [biosample_summary="Homo sapiens MCF-7" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DMR [biosamplesummary="Homo sapiens MCF-7" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN383STU|/analyses/ENCAN383STU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF785NTC|/files/ENCFF785NTC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF232NLC|/files/ENCFF232NLC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF232NLC|/files/ENCFF232NLC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.49. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF854DIW|/files/ENCFF854DIW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DMR | float |
TF_ChIP-seq_ENCSR000DMR |
TF_ChIP-seq ENCSR000DMR [biosample_summary="Homo sapiens MCF-7" and target="CTCF"]
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[7.49, 549] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF785NTC.bed.gz | 1.27 MB | 892f4b850dff9fb7aa09d2ebbc4e84ba |
| ENCFF785NTC.bed.gz.dvc | 101.0 B | 527146dfb386820d178e8050c6b81934 |
| ENCFF785NTC.tabix.bed.gz | 964.55 KB | 7620542cc2b32911c5bdb2a04e5b3203 |
| ENCFF785NTC.tabix.bed.gz.dvc | 106.0 B | ce0b19647d361c333c6a264c5fcee518 |
| ENCFF785NTC.tabix.bed.gz.tbi | 436.24 KB | 057cc4a65cf4a2aaf5057dce732518a5 |
| ENCFF785NTC.tabix.bed.gz.tbi.dvc | 110.0 B | c0ab80ed8ddccece6930e9e0c58a2328 |
| genomic_resource.yaml | 3.49 KB | 78aab9b8f9c161e5ef3c0aff6ebd299c |
| genomic_resource_original.yaml | 3.4 KB | cb786092502dba1af07daaac72ab8a88 |
| statistics/ |