TF_ChIP-seq_ENCSR000DMH
TF_ChIP-seq ENCSR000DMH [biosample_summary="Homo sapiens lung tissue male adult (27 years) and male adult (35 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DMH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DMH [biosamplesummary="Homo sapiens lung tissue male adult (27 years) and male adult (35 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (35 years) male adult (27 years) output_type: optimal IDR thresholded peaks audit_error: Processed alignments file {ENCFF635ZTX|/files/ENCFF635ZTX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 2917732 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF896LIL|/files/ENCFF896LIL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3964345 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Archived analysis {ENCAN832CBC|/analyses/ENCAN832CBC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF896LIL|/files/ENCFF896LIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF896LIL|/files/ENCFF896LIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DMH | float |
TF_ChIP-seq_ENCSR000DMH |
TF_ChIP-seq ENCSR000DMH [biosample_summary="Homo sapiens lung tissue male adult (27 years) and male adult (35 years)" and target="CTCF"]
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[2.28, 293] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF694SEF.bed.gz | 341.27 KB | b1dde7461d8305cdcaa652804ba6b72d |
| ENCFF694SEF.bed.gz.dvc | 100.0 B | 7f8c7968cdb44e36bf319edca2d6c352 |
| ENCFF694SEF.tabix.bed.gz | 275.7 KB | 535cb0ee28512ec44e56ec8fe9e33f47 |
| ENCFF694SEF.tabix.bed.gz.dvc | 106.0 B | a5f2e8281f8f9ea1e8aa70ab8616afa5 |
| ENCFF694SEF.tabix.bed.gz.tbi | 175.29 KB | 4b80c52eceed1d973043025123ed1657 |
| ENCFF694SEF.tabix.bed.gz.tbi.dvc | 110.0 B | a4b4daabf6779f5a515e96dac0470c10 |
| genomic_resource.yaml | 3.77 KB | 24e3eb517017a663d6b0dc6f121a3336 |
| genomic_resource_original.yaml | 3.63 KB | 0d95547c292c081b7cecbb09c7512694 |
| statistics/ |