type: position_score
table:
  filename: ENCFF664CQH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DLW
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000DLW [TISSUE: Homo sapiens endothelial cell of umbilical
    vein newborn, TARGET: CTCF]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: newborn


    **output\_type**: conservative IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN996IYY|/analyses/ENCAN996IYY/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN996IYY|/analyses/ENCAN996IYY/}
    has in progress subobject document {2c6beb16-84f5-4228-bcb7-9808a4d9e97d|/documents/2c6beb16-84f5-4228-bcb7-9808a4d9e97d/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF690KEO|/files/ENCFF690KEO/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7840777 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_not\_compliant**: Processed alignments file {ENCFF307WMW|/files/ENCFF307WMW/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8750997 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DLW
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: newborn
    biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002618/
    perturbed: false
    doi: 10.17989/ENCSR000DLW
    date_created: '2013-09-13T16:01:40.729013-08:00'
    date_released: '2011-03-17'
    submitter_comment: As of August 2022, the donors associated with the biosamples
      in this dataset were changed from ENCDO000AAS to ENCDO466MPW and ENCDO560UMK.
      See PMID:32728101.
    target: CTCF
