type: position_score
table:
  filename: ENCFF240MUS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DLS
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DLS [biosample_summary="Homo sapiens HepG2" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DLS [biosample_summary="Homo sapiens HepG2" and target="CTCF"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF255JDC|/files/ENCFF255JDC/} processed by ChIP-seq\
    \ ENCODE4 v1.5.1 GRCh38 pipeline has 4888689 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting CTCF-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**:\
    \ Released analysis {ENCAN700ZXA|/analyses/ENCAN700ZXA/} has in progress subobject\
    \ quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN700ZXA|/analyses/ENCAN700ZXA/} has\
    \ in progress subobject document {79342162-8cb4-472a-a5ee-59e356f7ef31|/documents/79342162-8cb4-472a-a5ee-59e356f7ef31/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF485DWL|/files/ENCFF485DWL/}\
    \ processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 5054757 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DLS
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HepG2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR000DLS
    date_created: '2013-09-13T16:00:16.823717-08:00'
    date_released: '2011-03-17'
    submitter_comment: ''
    target: CTCF
