TF_ChIP-seq_ENCSR000DLK
TF_ChIP-seq ENCSR000DLK [biosample_summary="Homo sapiens H1" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DLK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DLK [biosamplesummary="Homo sapiens H1" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN075FQD|/analyses/ENCAN075FQD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN075FQD|/analyses/ENCAN075FQD/} has in progress subobject document {b57aa01f-0ec1-4e6e-9380-3e369b076664|/documents/b57aa01f-0ec1-4e6e-9380-3e369b076664/} audit_not_compliant: Processed alignments file {ENCFF237PQJ|/files/ENCFF237PQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 9785475 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF237PQJ|/files/ENCFF237PQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DLK | float |
TF_ChIP-seq_ENCSR000DLK |
TF_ChIP-seq ENCSR000DLK [biosample_summary="Homo sapiens H1" and target="CTCF"]
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[3.63, 194] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF412KEU.bed.gz | 581.53 KB | a6f6143c04c10d75862e1e922d87f8d7 |
| ENCFF412KEU.bed.gz.dvc | 100.0 B | 807b78725c444c5d3779141d1ddf3d64 |
| ENCFF412KEU.tabix.bed.gz | 452.5 KB | 21a0aed77fc8a018844d332b18fc932b |
| ENCFF412KEU.tabix.bed.gz.dvc | 106.0 B | aaee7c084b025f8f1c8446bd720fb22d |
| ENCFF412KEU.tabix.bed.gz.tbi | 253.14 KB | 35f79a63f43f959d4b5d4d0a36098a31 |
| ENCFF412KEU.tabix.bed.gz.tbi.dvc | 110.0 B | 28abb7ad893a7c6df1af6f2c93545d52 |
| genomic_resource.yaml | 2.73 KB | 09a96dad620a90a761923c7d32cb1d48 |
| genomic_resource_original.yaml | 2.63 KB | c7bebfd1065cbad9a04a65bf6a588f6f |
| statistics/ |