TF_ChIP-seq_ENCSR000DLG
TF_ChIP-seq ENCSR000DLG [biosample_summary="Homo sapiens GM20000" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DLG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DLG [biosamplesummary="Homo sapiens GM20000" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF893WNT|/files/ENCFF893WNT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 3934566 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF365MSX|/files/ENCFF365MSX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 4205237 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN916XOE|/analyses/ENCAN916XOE/} has in progress subobject document {e32ff407-cff0-4640-87c9-bad0fbff50e0|/documents/e32ff407-cff0-4640-87c9-bad0fbff50e0/} audit_internal_action: Released analysis {ENCAN916XOE|/analyses/ENCAN916XOE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365MSX|/files/ENCFF365MSX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF365MSX|/files/ENCFF365MSX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DLG | float |
TF_ChIP-seq_ENCSR000DLG |
TF_ChIP-seq ENCSR000DLG [biosample_summary="Homo sapiens GM20000" and target="CTCF"]
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[3.88, 170] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF171FLG.bed.gz | 421.12 KB | 2bd47fceee12d4453a1ae51ec348bff9 |
| ENCFF171FLG.bed.gz.dvc | 100.0 B | 1364c8421720e160d859c6ac39bc7814 |
| ENCFF171FLG.tabix.bed.gz | 327.79 KB | 45da13a88631631bd98f4c8111f17cb9 |
| ENCFF171FLG.tabix.bed.gz.dvc | 106.0 B | 1aff78b7fa069375fe88affed31919f7 |
| ENCFF171FLG.tabix.bed.gz.tbi | 200.25 KB | 47ecf15fe247d11e72bac356de28f7ec |
| ENCFF171FLG.tabix.bed.gz.tbi.dvc | 110.0 B | d2aaaca1c72aaee7e492907b2f344993 |
| genomic_resource.yaml | 3.88 KB | 5131a087f1fb4a7650ff334dadb7d6e8 |
| genomic_resource_original.yaml | 3.78 KB | 912ff3f4b23f8a4a7512858adc277372 |
| statistics/ |