TF_ChIP-seq_ENCSR000DKM
TF_ChIP-seq ENCSR000DKM [biosample_summary="Homo sapiens H54" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000DKM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DKM [biosamplesummary="Homo sapiens H54" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN921YRH|/analyses/ENCAN921YRH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF171AIR|/files/ENCFF171AIR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14083121 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF243RDR|/files/ENCFF243RDR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10679194 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF243RDR|/files/ENCFF243RDR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF243RDR|/files/ENCFF243RDR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DKM | float |
TF_ChIP-seq_ENCSR000DKM |
TF_ChIP-seq ENCSR000DKM [biosample_summary="Homo sapiens H54" and target="POLR2A"]
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[4.14, 379] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF226BZE.bed.gz | 321.33 KB | b663706fb15aa5ee7ae7dd0124c9d9b7 |
| ENCFF226BZE.bed.gz.dvc | 100.0 B | ba284198dd9b726ec2a221ed07f8fa33 |
| ENCFF226BZE.tabix.bed.gz | 242.98 KB | c3f0c09452f4f1c9f6f66cb6523d6c05 |
| ENCFF226BZE.tabix.bed.gz.dvc | 106.0 B | a4081a5adb7b5c807a6265265dc3cfc0 |
| ENCFF226BZE.tabix.bed.gz.tbi | 115.85 KB | 3cc524f01710a13333b5faeff7c1ee2d |
| ENCFF226BZE.tabix.bed.gz.tbi.dvc | 110.0 B | 80045ebece6e754f67e9539de390c0d4 |
| genomic_resource.yaml | 3.66 KB | 8dabf1d0f0aec885f94965739d2abc7e |
| genomic_resource_original.yaml | 3.56 KB | 5c5277bbe4031e83a0c9ed5e696c22eb |
| statistics/ |