TF_ChIP-seq_ENCSR000DKA
TF_ChIP-seq ENCSR000DKA [biosample_summary="Homo sapiens K562 stably expressing GATA2" and target="GATA2"]
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| Id: | TF_ChIP-seq/ENCSR000DKA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DKA [biosamplesummary="Homo sapiens K562 stably expressing GATA2" and target="GATA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing GATA2 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN268ARZ|/analyses/ENCAN268ARZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF997NUA|/files/ENCFF997NUA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF333IVK|/files/ENCFF333IVK/}, {ENCFF997NUA|/files/ENCFF997NUA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.30 and a self consistency ratio of 9.05. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF989DVP|/files/ENCFF989DVP/}, {ENCFF174QFT|/files/ENCFF174QFT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.30 and a self consistency ratio of 9.05. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF082TOF|/files/ENCFF082TOF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18723582 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DKA | float |
TF_ChIP-seq_ENCSR000DKA |
TF_ChIP-seq ENCSR000DKA [biosample_summary="Homo sapiens K562 stably expressing GATA2" and target="GATA2"]
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[7.73, 472] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF997NUA.bed.gz | 358.45 KB | 6e6fbb7e4e34db3c1698ef089d41790b |
| ENCFF997NUA.bed.gz.dvc | 100.0 B | edc28421d9fa04ebade8dbd0ade75974 |
| ENCFF997NUA.tabix.bed.gz | 289.57 KB | 896adf0802d22ee137daa03943b1cdec |
| ENCFF997NUA.tabix.bed.gz.dvc | 106.0 B | f57cadc4c134b16bd88b71dc0f069364 |
| ENCFF997NUA.tabix.bed.gz.tbi | 123.82 KB | 3e63097bd1b78df06b8bb43ecbb6a029 |
| ENCFF997NUA.tabix.bed.gz.tbi.dvc | 110.0 B | a2bc9c6755489c19f5d782c5aefd5e66 |
| genomic_resource.yaml | 3.22 KB | 2541d38518a42a142274d102c1ab8256 |
| genomic_resource_original.yaml | 3.11 KB | 8ea619ae6ccaba6e47e3194b21f03153 |
| statistics/ |