TF_ChIP-seq_ENCSR000DJW
TF_ChIP-seq ENCSR000DJW [biosample_summary="Homo sapiens K562 stably expressing NR4A1" and target="NR4A1"]
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| Id: | TF_ChIP-seq/ENCSR000DJW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DJW [biosamplesummary="Homo sapiens K562 stably expressing NR4A1" and target="NR4A1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing NR4A1 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF868BIT|/files/ENCFF868BIT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN516CZC|/analyses/ENCAN516CZC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF468APC|/files/ENCFF468APC/}, {ENCFF171BKD|/files/ENCFF171BKD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 14.48 and a self consistency ratio of 2.82. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF002VSM|/files/ENCFF002VSM/}, {ENCFF868BIT|/files/ENCFF868BIT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 14.48 and a self consistency ratio of 2.82. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF602UAC|/files/ENCFF602UAC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19266769 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR4A1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF650RFL|/files/ENCFF650RFL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15853862 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR4A1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DJW | float |
TF_ChIP-seq_ENCSR000DJW |
TF_ChIP-seq ENCSR000DJW [biosample_summary="Homo sapiens K562 stably expressing NR4A1" and target="NR4A1"]
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[6.73, 124] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF868BIT.bed.gz | 15.23 KB | 51debf39c5cf7bebc1d7e177410af26e |
| ENCFF868BIT.bed.gz.dvc | 99.0 B | b4ae6256bf3cd71a04674f1c004e801d |
| ENCFF868BIT.tabix.bed.gz | 10.94 KB | 37bfeb18f5c00796797a53ab7fe4e549 |
| ENCFF868BIT.tabix.bed.gz.dvc | 105.0 B | f2ae86fc9c87346fbe89cbc61e631455 |
| ENCFF868BIT.tabix.bed.gz.tbi | 9.84 KB | 3d9658f75ec637d94aa0e1b89b5e0122 |
| ENCFF868BIT.tabix.bed.gz.tbi.dvc | 109.0 B | c7f6cc6322f6ece7edb281c829dfc35b |
| genomic_resource.yaml | 3.7 KB | 75cad393d698d8d7d276c584ee3a8952 |
| genomic_resource_original.yaml | 3.58 KB | b43b1b65b9a561c67cb9488433ad42f3 |
| statistics/ |