TF_ChIP-seq_ENCSR000BVL
TF_ChIP-seq ENCSR000BVL [biosample_summary="Homo sapiens HepG2" and target="CREB1"]
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| Id: | TF_ChIP-seq/ENCSR000BVL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BVL [biosamplesummary="Homo sapiens HepG2" and target="CREB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN226OYD|/analyses/ENCAN226OYD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN226OYD|/analyses/ENCAN226OYD/} has in progress subobject document {15bc5cda-72da-47cd-964e-ee648b3b58ea|/documents/15bc5cda-72da-47cd-964e-ee648b3b58ea/} audit_warning: Processed alignments file {ENCFF002WEO|/files/ENCFF002WEO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19978402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CREB1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF738LQC|/files/ENCFF738LQC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BVL | float |
TF_ChIP-seq_ENCSR000BVL |
TF_ChIP-seq ENCSR000BVL [biosample_summary="Homo sapiens HepG2" and target="CREB1"]
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[5.69, 640] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF738LQC.bed.gz | 408.7 KB | 5784b98dfda2568525bb799ba7b85953 |
| ENCFF738LQC.bed.gz.dvc | 100.0 B | 79124b90f4f3e95fc8555c25f6d06984 |
| ENCFF738LQC.tabix.bed.gz | 317.46 KB | 8d514105a26e6d50608d9eb9f357fe84 |
| ENCFF738LQC.tabix.bed.gz.dvc | 106.0 B | e50da5f99c84caa7bc3a657cf6022232 |
| ENCFF738LQC.tabix.bed.gz.tbi | 143.72 KB | 44126406e4ca289ecd1049b3f2c56c9a |
| ENCFF738LQC.tabix.bed.gz.tbi.dvc | 110.0 B | 9db1abbdfb5015bd961fbb5134950db0 |
| genomic_resource.yaml | 2.6 KB | 71604270fd275b5a5137f971a8650b0b |
| genomic_resource_original.yaml | 2.51 KB | d282eb18c735b9b60d5e7cafc33b0ae1 |
| statistics/ |