TF_ChIP-seq_ENCSR000BVH
TF_ChIP-seq ENCSR000BVH [biosample_summary="Homo sapiens HCT116" and target="ELF1"]
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| Id: | TF_ChIP-seq/ENCSR000BVH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BVH [biosamplesummary="Homo sapiens HCT116" and target="ELF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN514JRG|/analyses/ENCAN514JRG/} has in progress subobject document {39e5415b-b852-443d-88c8-1be912301581|/documents/39e5415b-b852-443d-88c8-1be912301581/} audit_internal_action: Released analysis {ENCAN514JRG|/analyses/ENCAN514JRG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF868JOM|/files/ENCFF868JOM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19733247 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF420PYW|/files/ENCFF420PYW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.29 and a self consistency ratio of 3.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BVH | float |
TF_ChIP-seq_ENCSR000BVH |
TF_ChIP-seq ENCSR000BVH [biosample_summary="Homo sapiens HCT116" and target="ELF1"]
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[7.81, 699] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF420PYW.bed.gz | 95.73 KB | 443c7e08daf7c3b796535b5fdd4e8e13 |
| ENCFF420PYW.bed.gz.dvc | 99.0 B | 7c50cd9261b5a7fc74d4569b1b1c9499 |
| ENCFF420PYW.tabix.bed.gz | 71.59 KB | 31ae57696059a742bb2aadfd14e76f22 |
| ENCFF420PYW.tabix.bed.gz.dvc | 105.0 B | d33ba610676cd66728bfcaf76fc37e5b |
| ENCFF420PYW.tabix.bed.gz.tbi | 50.33 KB | 20070e779fddabe06bc7eb6f377f3a23 |
| ENCFF420PYW.tabix.bed.gz.tbi.dvc | 109.0 B | 24cf5062496689d0f9394f432f087ab0 |
| genomic_resource.yaml | 2.6 KB | 1d205293802e0b30651f4cbda795a5e2 |
| genomic_resource_original.yaml | 2.51 KB | 36139e6bc50e067d8d90b044177ade81 |
| statistics/ |