type: position_score
table:
  filename: ENCFF146AYQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BVC
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000BVC [TISSUE: Homo sapiens SK-N-SH, TARGET: MEF2A]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN914ZWB|/analyses/ENCAN914ZWB/} has in progress\
    \ subobject document {0d42a823-c17d-4c79-a848-9ee4ad30851d|/documents/0d42a823-c17d-4c79-a848-9ee4ad30851d/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN914ZWB|/analyses/ENCAN914ZWB/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF808BAL|/files/ENCFF808BAL/}\
    \ processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 13381683 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ MEF2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Replicate concordance in ChIP-seq experiments is measured by calculating\
    \ IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded\
    \ peaks files {ENCFF146AYQ|/files/ENCFF146AYQ/} processed by ChIP-seq ENCODE4\
    \ v1.4.0 GRCh38 pipeline have a rescue ratio of 1.36 and a self consistency ratio\
    \ of 2.90. According to ENCODE standards, having both rescue ratio and self consistency\
    \ ratio values < 2 is recommended, but having only one of the ratio values < 2\
    \ is acceptable.\n\n**audit\\_warning**: Replicate concordance in ChIP-seq experiments\
    \ is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE\
    \ processed IDR thresholded peaks files {ENCFF053MLP|/files/ENCFF053MLP/} processed\
    \ by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.36 and a\
    \ self consistency ratio of 2.90. According to ENCODE standards, having both rescue\
    \ ratio and self consistency ratio values < 2 is recommended, but having only\
    \ one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BVC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens SK-N-SH
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003072/
    perturbed: false
    doi: 10.17989/ENCSR000BVC
    date_created: '2013-09-13T16:01:37.330449-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: MEF2A
