TF_ChIP-seq_ENCSR000BVA
TF_ChIP-seq ENCSR000BVA [biosample_summary="Homo sapiens MCF-7" and target="SRF"]
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| Id: | TF_ChIP-seq/ENCSR000BVA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BVA [biosamplesummary="Homo sapiens MCF-7" and target="SRF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN242HYF|/analyses/ENCAN242HYF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN242HYF|/analyses/ENCAN242HYF/} has in progress subobject document {af537ae3-f025-4214-9d4d-dc82bfaef761|/documents/af537ae3-f025-4214-9d4d-dc82bfaef761/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF041RKR|/files/ENCFF041RKR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF041RKR|/files/ENCFF041RKR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BVA | float |
TF_ChIP-seq_ENCSR000BVA |
TF_ChIP-seq ENCSR000BVA [biosample_summary="Homo sapiens MCF-7" and target="SRF"]
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[6.07, 895] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF131TYZ.bed.gz | 182.82 KB | 2fe7d5fd4772c66567a826cc15ee48ef |
| ENCFF131TYZ.bed.gz.dvc | 100.0 B | a9aa3f7ae9b60431141592a7001aa0cb |
| ENCFF131TYZ.tabix.bed.gz | 131.11 KB | 02ad523bdadcc6937c97e3d10a993214 |
| ENCFF131TYZ.tabix.bed.gz.dvc | 106.0 B | 26103418309b7cabcd3fcdadee37bd09 |
| ENCFF131TYZ.tabix.bed.gz.tbi | 78.73 KB | 0446f047a45a0d6333924a78f466f61a |
| ENCFF131TYZ.tabix.bed.gz.tbi.dvc | 109.0 B | 6fc832fdcbb536d61850a88d099cbdd2 |
| genomic_resource.yaml | 2.87 KB | 6c8bc65e0872bd7cbe2f2ad1f89bec39 |
| genomic_resource_original.yaml | 2.77 KB | 9686b7e63a85f2fb3207ac6b90d09ff2 |
| statistics/ |