TF_ChIP-seq_ENCSR000BUY
TF_ChIP-seq ENCSR000BUY [biosample_summary="Homo sapiens MCF-7" and target="NR2F2"]
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| Id: | TF_ChIP-seq/ENCSR000BUY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUY [biosamplesummary="Homo sapiens MCF-7" and target="NR2F2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN497CYH|/analyses/ENCAN497CYH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF345VDF|/files/ENCFF345VDF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 13841574 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR2F2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF386FQQ|/files/ENCFF386FQQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.47. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUY | float |
TF_ChIP-seq_ENCSR000BUY |
TF_ChIP-seq ENCSR000BUY [biosample_summary="Homo sapiens MCF-7" and target="NR2F2"]
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[4.83, 549] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF386FQQ.bed.gz | 575.08 KB | fe924fb0a02275010ae94c0bfed108ce |
| ENCFF386FQQ.bed.gz.dvc | 100.0 B | 088ce80fd0826811b968b3deaa4e91ac |
| ENCFF386FQQ.tabix.bed.gz | 418.71 KB | 4d497461263f0ef33667e992f70353a5 |
| ENCFF386FQQ.tabix.bed.gz.dvc | 106.0 B | 28b33cfe6611ff698b7bbef901d3bcf2 |
| ENCFF386FQQ.tabix.bed.gz.tbi | 202.07 KB | bc4ca5c08bea0e539588728dc7963433 |
| ENCFF386FQQ.tabix.bed.gz.tbi.dvc | 110.0 B | 669528f9b92c8ecac8ace9c0e9062382 |
| genomic_resource.yaml | 2.38 KB | 6a710684cc43ceb37daf22c45ef6c420 |
| genomic_resource_original.yaml | 2.29 KB | e7b9b8f2cdfc8cc8a4d53c459a63fc72 |
| statistics/ |