TF_ChIP-seq_ENCSR000BUX
TF_ChIP-seq ENCSR000BUX [biosample_summary="Homo sapiens MCF-7" and target="EGR1"]
×
| Id: | TF_ChIP-seq/ENCSR000BUX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUX [biosamplesummary="Homo sapiens MCF-7" and target="EGR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN162JVB|/analyses/ENCAN162JVB/} has in progress subobject document {1ec50499-77d9-4eb4-bde3-6daf0f2f9eb8|/documents/1ec50499-77d9-4eb4-bde3-6daf0f2f9eb8/} audit_internal_action: Released analysis {ENCAN162JVB|/analyses/ENCAN162JVB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF178HMW|/files/ENCFF178HMW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14310513 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EGR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF427RSA|/files/ENCFF427RSA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.59 and a self consistency ratio of 2.93. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUX | float |
TF_ChIP-seq_ENCSR000BUX |
TF_ChIP-seq ENCSR000BUX [biosample_summary="Homo sapiens MCF-7" and target="EGR1"]
|
|
[5.17, 585] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF427RSA.bed.gz | 181.04 KB | 3cc51eca131ef859239595225167ef2b |
| ENCFF427RSA.bed.gz.dvc | 100.0 B | d9b2098d505ba23b0d3f300d04377704 |
| ENCFF427RSA.tabix.bed.gz | 126.64 KB | ea84178397a68cf1032b971ced478e6e |
| ENCFF427RSA.tabix.bed.gz.dvc | 106.0 B | be644bf9bb5b5640766e735d301438ba |
| ENCFF427RSA.tabix.bed.gz.tbi | 77.66 KB | 7650826c345b71ba420355a5e30d2208 |
| ENCFF427RSA.tabix.bed.gz.tbi.dvc | 109.0 B | 54689172c4905799b4d42c6b093a4b5f |
| genomic_resource.yaml | 2.6 KB | 0458be23d4946d04c1591d72a145bd71 |
| genomic_resource_original.yaml | 2.5 KB | 0cce3eb6ccf5b3f32311fb256d2f2ab6 |
| statistics/ |