TF_ChIP-seq_ENCSR000BUU
TF_ChIP-seq ENCSR000BUU [biosample_summary="Homo sapiens Ishikawa" and target="REST"]
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| Id: | TF_ChIP-seq/ENCSR000BUU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUU [biosamplesummary="Homo sapiens Ishikawa" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF529WFD|/files/ENCFF529WFD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN074VHV|/analyses/ENCAN074VHV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF729XEF|/files/ENCFF729XEF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10885061 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF729XEF|/files/ENCFF729XEF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF729XEF|/files/ENCFF729XEF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUU | float |
TF_ChIP-seq_ENCSR000BUU |
TF_ChIP-seq ENCSR000BUU [biosample_summary="Homo sapiens Ishikawa" and target="REST"]
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[5.29, 814] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF529WFD.bed.gz | 176.07 KB | 0983e16e9d23591699b0e9ea5fc2207f |
| ENCFF529WFD.bed.gz.dvc | 100.0 B | 5c1f5c38440542658947e59d9ee27e7d |
| ENCFF529WFD.tabix.bed.gz | 125.38 KB | 67b5261292eb84b0122a6a8a6b8f0f73 |
| ENCFF529WFD.tabix.bed.gz.dvc | 106.0 B | 6797a21e5be72a78c93556c9e5bd72dd |
| ENCFF529WFD.tabix.bed.gz.tbi | 84.75 KB | e9f5ca5a738b574d517364dc6ae9e106 |
| ENCFF529WFD.tabix.bed.gz.tbi.dvc | 109.0 B | ee59b8ede501751f0282988664585b94 |
| genomic_resource.yaml | 3.33 KB | f4d04c8837935005ed9c13d3a491465e |
| genomic_resource_original.yaml | 3.24 KB | d15534b601b0afa6d30d013a58bfb339 |
| statistics/ |