TF_ChIP-seq_ENCSR000BUS
TF_ChIP-seq ENCSR000BUS [biosample_summary="Homo sapiens Ishikawa" and target="FOXM1"]
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| Id: | TF_ChIP-seq/ENCSR000BUS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUS [biosamplesummary="Homo sapiens Ishikawa" and target="FOXM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN986OKA|/analyses/ENCAN986OKA/} has in progress subobject document {2551fd6c-42f9-44df-8fb1-743c2b0427b5|/documents/2551fd6c-42f9-44df-8fb1-743c2b0427b5/} audit_internal_action: Released analysis {ENCAN986OKA|/analyses/ENCAN986OKA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF182JPN|/files/ENCFF182JPN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17976402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF317XQY|/files/ENCFF317XQY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of 2.59. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUS | float |
TF_ChIP-seq_ENCSR000BUS |
TF_ChIP-seq ENCSR000BUS [biosample_summary="Homo sapiens Ishikawa" and target="FOXM1"]
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[6.23, 577] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF317XQY.bed.gz | 219.3 KB | 6c845fcefa6daf57b1e6a9e9148061ad |
| ENCFF317XQY.bed.gz.dvc | 100.0 B | 65e9615f0db8068612a867e9db9c1588 |
| ENCFF317XQY.tabix.bed.gz | 165.47 KB | 9f545a8ca08791497eb0ff7896ce6b89 |
| ENCFF317XQY.tabix.bed.gz.dvc | 106.0 B | 15b81c114bf4bf0d07dd969297400a11 |
| ENCFF317XQY.tabix.bed.gz.tbi | 81.02 KB | 41ace5be1c79053d1e0d9b50a5bd5265 |
| ENCFF317XQY.tabix.bed.gz.tbi.dvc | 109.0 B | 99768042fa172f2572e65c177c5fee24 |
| genomic_resource.yaml | 2.61 KB | 9ca9ecce4558ea50e721548a7ade21a5 |
| genomic_resource_original.yaml | 2.51 KB | 5f9d5ff58befbd166bc07295f57eacdc |
| statistics/ |