TF_ChIP-seq_ENCSR000BUN
TF_ChIP-seq ENCSR000BUN [biosample_summary="Homo sapiens MCF-7" and target="TCF12"]
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| Id: | TF_ChIP-seq/ENCSR000BUN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUN [biosamplesummary="Homo sapiens MCF-7" and target="TCF12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN217HVE|/analyses/ENCAN217HVE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN217HVE|/analyses/ENCAN217HVE/} has in progress subobject document {52a9288d-857a-4bfe-8d56-0a316e1440dd|/documents/52a9288d-857a-4bfe-8d56-0a316e1440dd/} audit_warning: Processed alignments file {ENCFF066HOR|/files/ENCFF066HOR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11854201 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF066HOR|/files/ENCFF066HOR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF066HOR|/files/ENCFF066HOR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUN | float |
TF_ChIP-seq_ENCSR000BUN |
TF_ChIP-seq ENCSR000BUN [biosample_summary="Homo sapiens MCF-7" and target="TCF12"]
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[4.44, 451] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF987QLI.bed.gz | 200.01 KB | b04c896ae7d0ae11918938e6937cad21 |
| ENCFF987QLI.bed.gz.dvc | 100.0 B | 00baf73bd93ed56c55549f3e29d59850 |
| ENCFF987QLI.tabix.bed.gz | 149.15 KB | 5e5b64313c522ade3bf7320b99fe59a7 |
| ENCFF987QLI.tabix.bed.gz.dvc | 106.0 B | 251303e35c76e4253eadead29c1d4476 |
| ENCFF987QLI.tabix.bed.gz.tbi | 83.97 KB | 45a4a691ea7a1b7b94182ed547a0a9b4 |
| ENCFF987QLI.tabix.bed.gz.tbi.dvc | 109.0 B | 55a8e1c53ade562829dabc02273c09f7 |
| genomic_resource.yaml | 3.38 KB | 87f8a77d8c04168a4882671a945bc6ee |
| genomic_resource_original.yaml | 3.28 KB | 24e9b67eab116ac78780b7e0d7accc3b |
| statistics/ |