TF_ChIP-seq_ENCSR000BUM
TF_ChIP-seq ENCSR000BUM [biosample_summary="Homo sapiens MCF-7" and target="SIN3A"]
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| Id: | TF_ChIP-seq/ENCSR000BUM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUM [biosamplesummary="Homo sapiens MCF-7" and target="SIN3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN131PQX|/analyses/ENCAN131PQX/} has in progress subobject document {60a8b9a0-2cad-4bf0-9dd4-ca54926002bc|/documents/60a8b9a0-2cad-4bf0-9dd4-ca54926002bc/} audit_internal_action: Released analysis {ENCAN131PQX|/analyses/ENCAN131PQX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF182DUX|/files/ENCFF182DUX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF182DUX|/files/ENCFF182DUX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF803WYI|/files/ENCFF803WYI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUM | float |
TF_ChIP-seq_ENCSR000BUM |
TF_ChIP-seq ENCSR000BUM [biosample_summary="Homo sapiens MCF-7" and target="SIN3A"]
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[6.43, 596] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803WYI.bed.gz | 662.61 KB | d387f138f456691fd8972f87a1fdc343 |
| ENCFF803WYI.bed.gz.dvc | 100.0 B | 3a3b67df77016e204e90e3f461f1c8a9 |
| ENCFF803WYI.tabix.bed.gz | 497.55 KB | 208fd199239ada2f47599a887b5bbcf0 |
| ENCFF803WYI.tabix.bed.gz.dvc | 106.0 B | 553f4c4c8964efc7b99e8ac725073ea8 |
| ENCFF803WYI.tabix.bed.gz.tbi | 208.72 KB | 36ca832cbe696b1871f6a753b5e35865 |
| ENCFF803WYI.tabix.bed.gz.tbi.dvc | 110.0 B | 9bf994283105ff39c160fbabd751f43f |
| genomic_resource.yaml | 3.41 KB | d518da8607ea3b2c56bfbc3bdd95f587 |
| genomic_resource_original.yaml | 3.31 KB | c7364398ec6b6fc120a4f05ad5c9ef56 |
| statistics/ |