TF_ChIP-seq_ENCSR000BUL
TF_ChIP-seq ENCSR000BUL [biosample_summary="Homo sapiens MCF-7" and target="MAX"]
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| Id: | TF_ChIP-seq/ENCSR000BUL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUL [biosamplesummary="Homo sapiens MCF-7" and target="MAX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN567PRD|/analyses/ENCAN567PRD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN567PRD|/analyses/ENCAN567PRD/} has in progress subobject document {2c3604c7-5fc8-4b3c-93cf-adfcf733f842|/documents/2c3604c7-5fc8-4b3c-93cf-adfcf733f842/} audit_warning: Processed alignments file {ENCFF973YIT|/files/ENCFF973YIT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10019498 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAX-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF624CRN|/files/ENCFF624CRN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 4.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUL | float |
TF_ChIP-seq_ENCSR000BUL |
TF_ChIP-seq ENCSR000BUL [biosample_summary="Homo sapiens MCF-7" and target="MAX"]
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[6.07, 534] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624CRN.bed.gz | 651.15 KB | c02c6049184ee2ba61b29a18b1a335d1 |
| ENCFF624CRN.bed.gz.dvc | 100.0 B | b0d066be9212c37c00aab55b44f9185f |
| ENCFF624CRN.tabix.bed.gz | 493.56 KB | 20c40649f22638e58fb08e62707aa776 |
| ENCFF624CRN.tabix.bed.gz.dvc | 106.0 B | f5b5b8d089c50db8eae1cbd5a6e550b3 |
| ENCFF624CRN.tabix.bed.gz.tbi | 195.5 KB | f95b7dc3d64e0d6fa527c71885355e28 |
| ENCFF624CRN.tabix.bed.gz.tbi.dvc | 110.0 B | e0e343fef5e4c5755d07dc54a36286c6 |
| genomic_resource.yaml | 2.59 KB | 68e7880a07548ac2569c69f62e5cbd06 |
| genomic_resource_original.yaml | 2.5 KB | 005d5937dffa20649050605a81d420e9 |
| statistics/ |