TF_ChIP-seq_ENCSR000BUI
TF_ChIP-seq ENCSR000BUI [biosample_summary="Homo sapiens MCF-7" and target="FOSL2"]
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| Id: | TF_ChIP-seq/ENCSR000BUI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUI [biosamplesummary="Homo sapiens MCF-7" and target="FOSL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN187DFZ|/analyses/ENCAN187DFZ/} has in progress subobject document {4051b358-ebf2-4400-b6bc-d45b18956e7e|/documents/4051b358-ebf2-4400-b6bc-d45b18956e7e/} audit_internal_action: Released analysis {ENCAN187DFZ|/analyses/ENCAN187DFZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF369BER|/files/ENCFF369BER/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14104444 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOSL2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF423KOE|/files/ENCFF423KOE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUI | float |
TF_ChIP-seq_ENCSR000BUI |
TF_ChIP-seq ENCSR000BUI [biosample_summary="Homo sapiens MCF-7" and target="FOSL2"]
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[4.52, 386] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF423KOE.bed.gz | 360.84 KB | 1d1be279f337767c1648b21dff8c9970 |
| ENCFF423KOE.bed.gz.dvc | 100.0 B | d16163e7c73b7aa9a676979a946c6ca8 |
| ENCFF423KOE.tabix.bed.gz | 257.62 KB | 11a2bb2111d5d0932d78180852b8a9d1 |
| ENCFF423KOE.tabix.bed.gz.dvc | 106.0 B | 07b0fd302ad0cb0228847bb5ffc32ffc |
| ENCFF423KOE.tabix.bed.gz.tbi | 153.69 KB | ffbc5cd61340a975cec4f31da1a0c8b6 |
| ENCFF423KOE.tabix.bed.gz.tbi.dvc | 110.0 B | 57b90b480142eb0abdc10a587504bc5a |
| genomic_resource.yaml | 2.6 KB | 3e809291331adea46400c099f57fc593 |
| genomic_resource_original.yaml | 2.51 KB | dacf6943b4e60dd2ea2f4a9134b0a0ae |
| statistics/ |