TF_ChIP-seq_ENCSR000BUA
TF_ChIP-seq ENCSR000BUA [biosample_summary="Homo sapiens SK-N-SH" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR000BUA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BUA [biosamplesummary="Homo sapiens SK-N-SH" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN216UQD|/analyses/ENCAN216UQD/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF742UWP|/files/ENCFF742UWP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16014307 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF978QYT|/files/ENCFF978QYT/}, {ENCFF654KAP|/files/ENCFF654KAP/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 2.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF134LSJ|/files/ENCFF134LSJ/}, {ENCFF079XMC|/files/ENCFF079XMC/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 2.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUA | float |
TF_ChIP-seq_ENCSR000BUA |
TF_ChIP-seq ENCSR000BUA [biosample_summary="Homo sapiens SK-N-SH" and target="EP300"]
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[5.44, 413] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF654KAP.bed.gz | 565.77 KB | 7c84b7c4a64358b8d7025b4b50626727 |
| ENCFF654KAP.bed.gz.dvc | 100.0 B | 1a120fb4d57ec7624adbd150475e206e |
| ENCFF654KAP.tabix.bed.gz | 409.49 KB | 6bf2a1e28b4ae22977752dc880d0e06b |
| ENCFF654KAP.tabix.bed.gz.dvc | 106.0 B | b4c6f623b16d839bfeff895ec4222adc |
| ENCFF654KAP.tabix.bed.gz.tbi | 182.73 KB | 60630df22efd4e7c5c34fad39581168d |
| ENCFF654KAP.tabix.bed.gz.tbi.dvc | 110.0 B | a97502871a25b43f5d862c72c5aa21c9 |
| genomic_resource.yaml | 2.97 KB | 0baa61263f004b7a58f8aa1f2aa24158 |
| genomic_resource_original.yaml | 2.88 KB | 60632239bc6ad2e2dc1b57d85c3ce4a0 |
| statistics/ |