type: position_score
table:
  filename: ENCFF138KSX.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BTV
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BTV [biosample_summary="Homo sapiens neural cell originated from H1" and target="REST"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BTV [biosample_summary="Homo sapiens neural cell originated from H1" and target="REST"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: male embryo


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN106JFV|/analyses/ENCAN106JFV/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN106JFV|/analyses/ENCAN106JFV/}
    has in progress subobject document {b06acb25-14a7-4f83-8e49-ba9f115f4900|/documents/b06acb25-14a7-4f83-8e49-ba9f115f4900/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF138KSX|/files/ENCFF138KSX/} processed by ChIP-seq
    ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency
    ratio of 2.32. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BTV
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male embryo
    biosample_summary: Homo sapiens neural cell originated from H1
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0002319/
    perturbed: false
    doi: 10.17989/ENCSR000BTV
    date_created: '2013-09-13T16:52:27.469961-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: REST
