TF_ChIP-seq_ENCSR000BTS
TF_ChIP-seq ENCSR000BTS [biosample_summary="Homo sapiens SK-N-SH" and target="ZBTB33"]
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| Id: | TF_ChIP-seq/ENCSR000BTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTS [biosamplesummary="Homo sapiens SK-N-SH" and target="ZBTB33"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN523VNV|/analyses/ENCAN523VNV/} has in progress subobject document {707ff35e-ed3c-4b81-afde-7818283e6cc8|/documents/707ff35e-ed3c-4b81-afde-7818283e6cc8/} audit_internal_action: Released analysis {ENCAN523VNV|/analyses/ENCAN523VNV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF337CPJ|/files/ENCFF337CPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 11057186 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF260GEA|/files/ENCFF260GEA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.05 and a self consistency ratio of 2.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF667JYU|/files/ENCFF667JYU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.05 and a self consistency ratio of 2.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTS | float |
TF_ChIP-seq_ENCSR000BTS |
TF_ChIP-seq ENCSR000BTS [biosample_summary="Homo sapiens SK-N-SH" and target="ZBTB33"]
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[4.45, 577] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF260GEA.bed.gz | 184.73 KB | 3362604c7f8ae01a582c9beaac577675 |
| ENCFF260GEA.bed.gz.dvc | 100.0 B | a40e1e4ef1c53ff0b9927ad8e66f4a18 |
| ENCFF260GEA.tabix.bed.gz | 133.39 KB | 865ef6d98cf8874432cded59ed0a1a7a |
| ENCFF260GEA.tabix.bed.gz.dvc | 106.0 B | 54fa8d587e2b5a848d43cc8b63e22cfd |
| ENCFF260GEA.tabix.bed.gz.tbi | 79.09 KB | 7f3a419fb652a6f028f9c465af451b58 |
| ENCFF260GEA.tabix.bed.gz.tbi.dvc | 109.0 B | 284934a15c85b3c2cb4d9ba0a49820dc |
| genomic_resource.yaml | 3.15 KB | c8ea009c2238286481ea4bf66e811224 |
| genomic_resource_original.yaml | 3.05 KB | 85e1f4a82a79b40cd4789c74a963b6c4 |
| statistics/ |