TF_ChIP-seq_ENCSR000BTO
TF_ChIP-seq ENCSR000BTO [biosample_summary="Homo sapiens Ishikawa" and target="TAF1"]
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| Id: | TF_ChIP-seq/ENCSR000BTO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTO [biosamplesummary="Homo sapiens Ishikawa" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF624LBU|/files/ENCFF624LBU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN192UST|/analyses/ENCAN192UST/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF159QGC|/files/ENCFF159QGC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11829095 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF571GXI|/files/ENCFF571GXI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF571GXI|/files/ENCFF571GXI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTO | float |
TF_ChIP-seq_ENCSR000BTO |
TF_ChIP-seq ENCSR000BTO [biosample_summary="Homo sapiens Ishikawa" and target="TAF1"]
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[6.76, 496] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624LBU.bed.gz | 311.76 KB | b401608ca622687852faa585a9142381 |
| ENCFF624LBU.bed.gz.dvc | 100.0 B | a3681a1991cb88633296f1d0a1b3618f |
| ENCFF624LBU.tabix.bed.gz | 248.6 KB | 1eb24dde3b5471048fdcd689b2bef2b4 |
| ENCFF624LBU.tabix.bed.gz.dvc | 106.0 B | fe26efb3ef3d555bcb8e8abe263916e2 |
| ENCFF624LBU.tabix.bed.gz.tbi | 103.54 KB | 3d2cde55a2da623838dab01d4d6d39e5 |
| ENCFF624LBU.tabix.bed.gz.tbi.dvc | 110.0 B | 6b2a7b34928b0b26b7657d2734a03053 |
| genomic_resource.yaml | 3.33 KB | fad02d889cbe5f4f74130bf8c74a67b0 |
| genomic_resource_original.yaml | 3.24 KB | 0581db3981437822b1696220a6fc30b6 |
| statistics/ |