type: position_score
table:
  filename: ENCFF280GDT.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BTK
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BTK [biosample_summary="Homo sapiens HL-60" and target="GABPA"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BTK [biosample_summary="Homo sapiens HL-60" and target="GABPA"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN520VJA|/analyses/ENCAN520VJA/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF704SGZ|/files/ENCFF704SGZ/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 16497679 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ GABPA-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF839FNS|/files/ENCFF839FNS/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline has 18946253 usable fragments. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human\
    \ and investigated as a transcription factor is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BTK
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HL-60
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002793/
    perturbed: false
    doi: 10.17989/ENCSR000BTK
    date_created: '2013-09-13T16:51:53.072051-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: GABPA
