TF_ChIP-seq_ENCSR000BTG
TF_ChIP-seq ENCSR000BTG [biosample_summary="Homo sapiens SK-N-SH" and target="GABPA"]
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| Id: | TF_ChIP-seq/ENCSR000BTG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTG [biosamplesummary="Homo sapiens SK-N-SH" and target="GABPA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN697ZWB|/analyses/ENCAN697ZWB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF855MYB|/files/ENCFF855MYB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18356486 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF605EBG|/files/ENCFF605EBG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF605EBG|/files/ENCFF605EBG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTG | float |
TF_ChIP-seq_ENCSR000BTG |
TF_ChIP-seq ENCSR000BTG [biosample_summary="Homo sapiens SK-N-SH" and target="GABPA"]
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[5.46, 765] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF157KZY.bed.gz | 213.18 KB | 1a704340beb7c042fc96e6ea98970855 |
| ENCFF157KZY.bed.gz.dvc | 100.0 B | 2bb9e14dc5873242ed509b3eda91e32f |
| ENCFF157KZY.tabix.bed.gz | 148.19 KB | a949a2ab71feb70414dd354b6656c73d |
| ENCFF157KZY.tabix.bed.gz.dvc | 106.0 B | 6a6e068840e59f13ca82da4a818495ca |
| ENCFF157KZY.tabix.bed.gz.tbi | 89.62 KB | 9666c11351ccd2550be7171827c9e1e0 |
| ENCFF157KZY.tabix.bed.gz.tbi.dvc | 109.0 B | a3d450127b61cdd82a8f8cb95da8bca0 |
| genomic_resource.yaml | 3.16 KB | 37df901ebf2d9cfefa30ad8a3464798b |
| genomic_resource_original.yaml | 3.06 KB | d2b8cd377588660a9abd1ba4ce95bc29 |
| statistics/ |