type: position_score
table:
  filename: ENCFF603MCO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BTF
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000BTF [TISSUE: Homo sapiens HL-60, TARGET: REST]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN334XUB|/analyses/ENCAN334XUB/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Replicate concordance in ChIP-seq experiments is\
    \ measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF128UOK|/files/ENCFF128UOK/}, {ENCFF603MCO|/files/ENCFF603MCO/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.18 and\
    \ a self consistency ratio of 4.32. According to ENCODE standards, having both\
    \ rescue ratio and self consistency ratio values < 2 is recommended, but having\
    \ only one of the ratio values < 2 is acceptable.\n\n**audit\\_not\\_compliant**:\
    \ Replicate concordance in ChIP-seq experiments is measured by calculating IDR\
    \ values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks\
    \ files {ENCFF975OED|/files/ENCFF975OED/}, {ENCFF939MDW|/files/ENCFF939MDW/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.18 and a self consistency\
    \ ratio of 4.32. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable.\n\n**audit\\_warning**: Processed alignments file\
    \ {ENCFF027GJA|/files/ENCFF027GJA/} processed by ChIP-seq ENCODE3 hg19 pipeline\
    \ has 19132039 usable fragments. The minimum ENCODE standard for each replicate\
    \ in a ChIP-seq experiment targeting REST-human and investigated as a transcription\
    \ factor is 10 million usable fragments. The recommended value is > 20 million,\
    \ but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}\
    \ )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BTF
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HL-60
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002793/
    perturbed: false
    doi: 10.17989/ENCSR000BTF
    date_created: '2013-09-13T16:02:13.097663-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: REST
