TF_ChIP-seq_ENCSR000BTD
TF_ChIP-seq ENCSR000BTD [biosample_summary="Homo sapiens Ishikawa" and target="SRF"]
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| Id: | TF_ChIP-seq/ENCSR000BTD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTD [biosamplesummary="Homo sapiens Ishikawa" and target="SRF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN299YOS|/analyses/ENCAN299YOS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN299YOS|/analyses/ENCAN299YOS/} has in progress subobject document {59226277-5032-48ea-b774-d041cbd32d40|/documents/59226277-5032-48ea-b774-d041cbd32d40/} audit_warning: Processed alignments file {ENCFF562OZO|/files/ENCFF562OZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18752640 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SRF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF714RQM|/files/ENCFF714RQM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTD | float |
TF_ChIP-seq_ENCSR000BTD |
TF_ChIP-seq ENCSR000BTD [biosample_summary="Homo sapiens Ishikawa" and target="SRF"]
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[5.76, 675] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF714RQM.bed.gz | 223.25 KB | f72872826bfe9038cf061ab2509d3700 |
| ENCFF714RQM.bed.gz.dvc | 100.0 B | 7a646362c12bc968dcc8bea716717e2e |
| ENCFF714RQM.tabix.bed.gz | 161.5 KB | b726b3e2b185b00c19fa08d696ff102a |
| ENCFF714RQM.tabix.bed.gz.dvc | 106.0 B | af9bb18e76b0069f0e9caea60381d686 |
| ENCFF714RQM.tabix.bed.gz.tbi | 101.17 KB | 3b22f7be106f753388041a36a1df51be |
| ENCFF714RQM.tabix.bed.gz.tbi.dvc | 110.0 B | 9a41ef7b1d652bdbee3f82b4bc0469d8 |
| genomic_resource.yaml | 2.6 KB | 38655408018bf1ddc8c8937c8f8379ec |
| genomic_resource_original.yaml | 2.51 KB | 5a08d4c3bfb424c02b907537fb3340c7 |
| statistics/ |