TF_ChIP-seq_ENCSR000BTC
TF_ChIP-seq ENCSR000BTC [biosample_summary="Homo sapiens A549" and target="E2F6"]
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| Id: | TF_ChIP-seq/ENCSR000BTC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTC [biosamplesummary="Homo sapiens A549" and target="E2F6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN668HBW|/analyses/ENCAN668HBW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN668HBW|/analyses/ENCAN668HBW/} has in progress subobject document {74c76022-0346-4ad7-9b7e-40bbbdf7f4d4|/documents/74c76022-0346-4ad7-9b7e-40bbbdf7f4d4/} audit_warning: Processed alignments file {ENCFF669SPS|/files/ENCFF669SPS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19452424 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F6-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF786NAO|/files/ENCFF786NAO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTC | float |
TF_ChIP-seq_ENCSR000BTC |
TF_ChIP-seq ENCSR000BTC [biosample_summary="Homo sapiens A549" and target="E2F6"]
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[5.8, 637] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786NAO.bed.gz | 325.13 KB | aa181f9c090623f8ce42aad5b3564e7a |
| ENCFF786NAO.bed.gz.dvc | 100.0 B | 039691d055ef9ed915f3372cc777e43d |
| ENCFF786NAO.tabix.bed.gz | 249.16 KB | 43322f9db6850688532646aa0fdea1d7 |
| ENCFF786NAO.tabix.bed.gz.dvc | 106.0 B | 0df037e21ea5bf73884b95397bbc789e |
| ENCFF786NAO.tabix.bed.gz.tbi | 108.45 KB | ab640fc4b0607a3f33067e75da840098 |
| ENCFF786NAO.tabix.bed.gz.tbi.dvc | 110.0 B | f79caed9af25b6e9c087db685763e0ea |
| genomic_resource.yaml | 2.6 KB | bf3e85162d162df0d7e58014873314e9 |
| genomic_resource_original.yaml | 2.5 KB | 49b8005c3b50a6feb5e5a77ef269a7d8 |
| statistics/ |