Resource
| Id | TF_ChIP-seq/ENCSR000BTC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BTC [biosample_summary="Homo sapiens A549" and target="E2F6"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN668HBW|/analyses/ENCAN668HBW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN668HBW|/analyses/ENCAN668HBW/} has in progress subobject document {74c76022-0346-4ad7-9b7e-40bbbdf7f4d4|/documents/74c76022-0346-4ad7-9b7e-40bbbdf7f4d4/} audit_warning: Processed alignments file {ENCFF669SPS|/files/ENCFF669SPS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19452424 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F6-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF786NAO|/files/ENCFF786NAO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTC | float |
TF_ChIP-seq_ENCSR000BTC |
TF_ChIP-seq ENCSR000BTC [biosample_summary="Homo sapiens A549" and target="E2F6"]
|
 |
[5.8, 637] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7233064 | 0.22% | 21776 |
| chr1 | 613564 | 0.25% | 1847 |
| chr2 | 627411 | 0.26% | 1936 |
| chr3 | 338979 | 0.17% | 1008 |
| chr4 | 182215 | 0.10% | 511 |
| chr5 | 351422 | 0.19% | 1058 |
| chr6 | 283427 | 0.17% | 821 |
| chr7 | 360706 | 0.23% | 1059 |
| chr8 | 322554 | 0.22% | 972 |
| chr9 | 316510 | 0.23% | 948 |
| chr10 | 342614 | 0.26% | 1054 |
| chr11 | 373372 | 0.28% | 1117 |
| chr12 | 417225 | 0.31% | 1298 |
| chr13 | 97616 | 0.09% | 284 |
| chr14 | 229292 | 0.21% | 706 |
| chr15 | 289800 | 0.28% | 874 |
| chr16 | 314032 | 0.35% | 928 |
| chr17 | 608326 | 0.73% | 1863 |
| chr18 | 89401 | 0.11% | 262 |
| chr19 | 478240 | 0.82% | 1479 |
| chr20 | 255397 | 0.40% | 751 |
| chr21 | 55600 | 0.12% | 161 |
| chr22 | 121230 | 0.24% | 347 |
| chrX | 163651 | 0.10% | 491 |
| chrY | 480 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 21776 | 1 | 1113 | 332.16 | 297 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF786NAO.bed.gz | 325.13 KB | aa181f9c090623f8ce42aad5b3564e7a |
| ENCFF786NAO.tabix.bed.gz | 249.16 KB | 43322f9db6850688532646aa0fdea1d7 |
| ENCFF786NAO.tabix.bed.gz.tbi | 108.45 KB | ab640fc4b0607a3f33067e75da840098 |
| genomic_resource.yaml | 2.6 KB | bf3e85162d162df0d7e58014873314e9 |
| statistics/ |