TF_ChIP-seq_ENCSR000BTB
TF_ChIP-seq ENCSR000BTB [biosample_summary="Homo sapiens SK-N-SH" and target="FOXM1"]
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| Id: | TF_ChIP-seq/ENCSR000BTB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTB [biosamplesummary="Homo sapiens SK-N-SH" and target="FOXM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN241EFN|/analyses/ENCAN241EFN/} has in progress subobject document {838a0aab-32fe-4dfc-85e5-60079bc4cc5a|/documents/838a0aab-32fe-4dfc-85e5-60079bc4cc5a/} audit_internal_action: Released analysis {ENCAN241EFN|/analyses/ENCAN241EFN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF478RQQ|/files/ENCFF478RQQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 15224424 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF259SAY|/files/ENCFF259SAY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18354467 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF478RQQ|/files/ENCFF478RQQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF478RQQ|/files/ENCFF478RQQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTB | float |
TF_ChIP-seq_ENCSR000BTB |
TF_ChIP-seq ENCSR000BTB [biosample_summary="Homo sapiens SK-N-SH" and target="FOXM1"]
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[4.74, 341] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF102GYM.bed.gz | 189.12 KB | c91869713ef5d393cafa4398b0609cc0 |
| ENCFF102GYM.bed.gz.dvc | 100.0 B | 09cd66eea51c7f15c3e0589b081391e7 |
| ENCFF102GYM.tabix.bed.gz | 143.44 KB | 225b3ed892cefccac8a189b259f80311 |
| ENCFF102GYM.tabix.bed.gz.dvc | 106.0 B | 610714be63b0d6adebfe91ffbfd0b001 |
| ENCFF102GYM.tabix.bed.gz.tbi | 75.58 KB | e2ea5a5567f3e64250af860fe83dc621 |
| ENCFF102GYM.tabix.bed.gz.tbi.dvc | 109.0 B | b4b3bbaa4d390af192e28cdbcc6f072d |
| genomic_resource.yaml | 3.88 KB | a8c5a0e3f7e6f3c67ac8bff5cb7fbcba |
| genomic_resource_original.yaml | 3.79 KB | 315b0fa13ec5bbeb88e92ce1d95234e7 |
| statistics/ |