TF_ChIP-seq_ENCSR000BSU
TF_ChIP-seq ENCSR000BSU [biosample_summary="Homo sapiens MCF-7" and target="JUND"]
×
| Id: | TF_ChIP-seq/ENCSR000BSU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BSU [biosamplesummary="Homo sapiens MCF-7" and target="JUND"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN660DIM|/analyses/ENCAN660DIM/} has in progress subobject document {e82fcdb1-8dec-433c-bca8-24fac5136dbb|/documents/e82fcdb1-8dec-433c-bca8-24fac5136dbb/} audit_internal_action: Released analysis {ENCAN660DIM|/analyses/ENCAN660DIM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF065JCY|/files/ENCFF065JCY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13135800 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF708XQE|/files/ENCFF708XQE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16188711 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065JCY|/files/ENCFF065JCY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065JCY|/files/ENCFF065JCY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSU | float |
TF_ChIP-seq_ENCSR000BSU |
TF_ChIP-seq ENCSR000BSU [biosample_summary="Homo sapiens MCF-7" and target="JUND"]
|
|
[4.16, 466] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF398OOD.bed.gz | 243.32 KB | 0639bb526625bea147eeeddbdee80f7a |
| ENCFF398OOD.bed.gz.dvc | 100.0 B | 2a86889c005d301a4a04c10ee3c530bc |
| ENCFF398OOD.tabix.bed.gz | 178.97 KB | 17794971d3f6759d453c76d764e30c34 |
| ENCFF398OOD.tabix.bed.gz.dvc | 106.0 B | c1c6071d507851c08ac7228e63655362 |
| ENCFF398OOD.tabix.bed.gz.tbi | 100.68 KB | 5bc6902bc53ddf2a05590790c4d85990 |
| ENCFF398OOD.tabix.bed.gz.tbi.dvc | 110.0 B | 062f2706278616993800f5a66fe03434 |
| genomic_resource.yaml | 3.87 KB | 70b0f901e01dd46a5130bb1783322ef3 |
| genomic_resource_original.yaml | 3.78 KB | f8731af202c35d7355cba7b1ab3be023 |
| statistics/ |