Resource
| Id | TF_ChIP-seq/ENCSR000BSS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSS [biosample_summary="Homo sapiens MCF-7" and target="ELF1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN199JBW|/analyses/ENCAN199JBW/} has in progress subobject document {ec427646-2bd8-44fc-a973-24e337451b78|/documents/ec427646-2bd8-44fc-a973-24e337451b78/} audit_internal_action: Released analysis {ENCAN199JBW|/analyses/ENCAN199JBW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF679QMP|/files/ENCFF679QMP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15051286 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSS | float |
TF_ChIP-seq_ENCSR000BSS |
TF_ChIP-seq ENCSR000BSS [biosample_summary="Homo sapiens MCF-7" and target="ELF1"]
|
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[5.05, 662] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6963884 | 0.22% | 22866 |
| chr1 | 617968 | 0.25% | 2031 |
| chr2 | 500806 | 0.21% | 1629 |
| chr3 | 415238 | 0.21% | 1351 |
| chr4 | 163450 | 0.09% | 530 |
| chr5 | 358506 | 0.20% | 1161 |
| chr6 | 395838 | 0.23% | 1266 |
| chr7 | 374378 | 0.23% | 1218 |
| chr8 | 336353 | 0.23% | 1107 |
| chr9 | 311851 | 0.23% | 1004 |
| chr10 | 311452 | 0.23% | 991 |
| chr11 | 292589 | 0.22% | 976 |
| chr12 | 357525 | 0.27% | 1176 |
| chr13 | 91601 | 0.08% | 303 |
| chr14 | 381947 | 0.36% | 1268 |
| chr15 | 243747 | 0.24% | 793 |
| chr16 | 326325 | 0.36% | 1094 |
| chr17 | 409999 | 0.49% | 1365 |
| chr18 | 62418 | 0.08% | 207 |
| chr19 | 366402 | 0.63% | 1238 |
| chr20 | 328232 | 0.51% | 1098 |
| chr21 | 84629 | 0.18% | 285 |
| chr22 | 120383 | 0.24% | 402 |
| chrX | 112247 | 0.07% | 373 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 22866 | 2 | 899 | 304.55 | 390 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF091NQE.bed.gz | 371.42 KB | 11aac8e168d26dbfdc49637ca1d86629 |
| ENCFF091NQE.tabix.bed.gz | 265.91 KB | 666f2713b7ec0cdd840d4f2e85322685 |
| ENCFF091NQE.tabix.bed.gz.tbi | 135.36 KB | 1446ea586cc4fcba57f6c31d5c813d62 |
| genomic_resource.yaml | 2.05 KB | e1dde898c2538d3d99387886fd1ed52a |
| statistics/ |
