Resource
| Id | TF_ChIP-seq/ENCSR000BSR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSR [biosample_summary="Homo sapiens MCF-7" and target="CEBPB"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN087WJW|/analyses/ENCAN087WJW/} has in progress subobject document {c7373d0f-ddcc-406a-83d9-3e034fbd442f|/documents/c7373d0f-ddcc-406a-83d9-3e034fbd442f/} audit_internal_action: Released analysis {ENCAN087WJW|/analyses/ENCAN087WJW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF341SFE|/files/ENCFF341SFE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13780448 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF240ZHW|/files/ENCFF240ZHW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSR | float |
TF_ChIP-seq_ENCSR000BSR |
TF_ChIP-seq ENCSR000BSR [biosample_summary="Homo sapiens MCF-7" and target="CEBPB"]
|
 |
[4.84, 578] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9329475 | 0.29% | 38069 |
| chr1 | 754434 | 0.30% | 3099 |
| chr2 | 820325 | 0.34% | 3324 |
| chr3 | 647589 | 0.33% | 2640 |
| chr4 | 336302 | 0.18% | 1391 |
| chr5 | 549879 | 0.30% | 2241 |
| chr6 | 640894 | 0.38% | 2621 |
| chr7 | 567324 | 0.36% | 2316 |
| chr8 | 545434 | 0.38% | 2220 |
| chr9 | 376127 | 0.27% | 1544 |
| chr10 | 473374 | 0.35% | 1914 |
| chr11 | 334095 | 0.25% | 1378 |
| chr12 | 512714 | 0.38% | 2077 |
| chr13 | 158593 | 0.14% | 648 |
| chr14 | 497522 | 0.46% | 2028 |
| chr15 | 306576 | 0.30% | 1252 |
| chr16 | 300208 | 0.33% | 1234 |
| chr17 | 406862 | 0.49% | 1637 |
| chr18 | 129650 | 0.16% | 530 |
| chr19 | 233807 | 0.40% | 959 |
| chr20 | 352276 | 0.55% | 1426 |
| chr21 | 111272 | 0.24% | 454 |
| chr22 | 105127 | 0.21% | 444 |
| chrX | 169091 | 0.11% | 692 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38069 | 1 | 573 | 245.07 | 276 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF240ZHW.bed.gz | 641.57 KB | 8c20c751b18b07075d20c6b9339c3dd4 |
| ENCFF240ZHW.tabix.bed.gz | 442.3 KB | 7b2fcc0192ad2d96c46554ff0d6864ea |
| ENCFF240ZHW.tabix.bed.gz.tbi | 238.91 KB | efb042aeb50168b0245248b210dda2df |
| genomic_resource.yaml | 2.6 KB | edecd0bb619d97d9b10dfe3b38b542c7 |
| statistics/ |