Resource

Id TF_ChIP-seq/ENCSR000BSPcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSP [biosample_summary="Homo sapiens MCF-7" and target="REST"]
Description
Labels
  • accession: ENCSR000BSP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001203/
  • biosample_summary: Homo sapiens MCF-7
  • date_created: 2013-12-12T06:34:11.107089+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: REST

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSP float

TF_ChIP-seq_ENCSR000BSP
TF_ChIP-seq ENCSR000BSP [biosample_summary="Homo sapiens MCF-7" and target="REST"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSP [5.14, 738]
n
3,326,049
mean
126
sd
163

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 33260490.10% 11086
chr1 277443 0.11% 923
chr2 257986 0.11% 855
chr3 201584 0.10% 666
chr4 94006 0.05% 324
chr5 193839 0.11% 632
chr6 168826 0.10% 579
chr7 194761 0.12% 651
chr8 193619 0.13% 662
chr9 144278 0.10% 471
chr10 146156 0.11% 471
chr11 146353 0.11% 496
chr12 160374 0.12% 533
chr13 41344 0.04% 139
chr14 194478 0.18% 663
chr15 102913 0.10% 334
chr16 146410 0.16% 475
chr17 157014 0.19% 532
chr18 41673 0.05% 150
chr19 113033 0.19% 347
chr20 201499 0.31% 688
chr21 37462 0.08% 126
chr22 59807 0.12% 190
chrX 51191 0.03% 179
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11086 2 1032 300.02 344
global segment-length histogram

Files

Filename Size md5
ENCFF680JMZ.bed.gz 189.02 KB 2d59e7bd83734fd8efc4ba218063b918
ENCFF680JMZ.tabix.bed.gz 131.98 KB 9b5de1deb37a3f838288a66e029a8d6b
ENCFF680JMZ.tabix.bed.gz.tbi 87.76 KB 33c6bbe497029897140f8ef0b51973d0
genomic_resource.yaml 2.05 KB 88a917a8ee64ad7a7d17a60425894b94
statistics/