TF_ChIP-seq_ENCSR000BSM
TF_ChIP-seq ENCSR000BSM [biosample_summary="Homo sapiens SK-N-SH" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR000BSM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BSM [biosamplesummary="Homo sapiens SK-N-SH" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN626IKY|/analyses/ENCAN626IKY/} has in progress subobject document {66b9e2c9-89c9-4f73-a5b7-bdf7c6f90333|/documents/66b9e2c9-89c9-4f73-a5b7-bdf7c6f90333/} audit_internal_action: Released analysis {ENCAN626IKY|/analyses/ENCAN626IKY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF804ZFN|/files/ENCFF804ZFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 10645779 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF804ZFN|/files/ENCFF804ZFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF804ZFN|/files/ENCFF804ZFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSM | float |
TF_ChIP-seq_ENCSR000BSM |
TF_ChIP-seq ENCSR000BSM [biosample_summary="Homo sapiens SK-N-SH" and target="YY1"]
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[4.88, 645] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF042OEY.bed.gz | 278.73 KB | c2c627fbab6bac4ce349e6d39a7f7096 |
| ENCFF042OEY.bed.gz.dvc | 100.0 B | 9dda12760e887d22dae8fa9b382d46d4 |
| ENCFF042OEY.tabix.bed.gz | 211.92 KB | eb83ba635fc05e04318343b3e79e1480 |
| ENCFF042OEY.tabix.bed.gz.dvc | 106.0 B | bc9c2e739ad4ec1f34e54030ba37e8d6 |
| ENCFF042OEY.tabix.bed.gz.tbi | 108.22 KB | f8123d0622adbaed7c85e944ada74f7b |
| ENCFF042OEY.tabix.bed.gz.tbi.dvc | 110.0 B | ecf0cf26633d8a388d43c2bbf81c1ff4 |
| genomic_resource.yaml | 3.38 KB | fcac0defb0f45608b0e08ead79d9c792 |
| genomic_resource_original.yaml | 3.28 KB | 2a0a031ddee51e0c573d04c7c06c5ad9 |
| statistics/ |