Resource

Id TF_ChIP-seq/ENCSR000BSGcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSG [biosample_summary="Homo sapiens HCT116" and target="SIN3A"]
Description
Labels
  • accession: ENCSR000BSG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:46.030346+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SIN3A

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSG float

TF_ChIP-seq_ENCSR000BSG
TF_ChIP-seq ENCSR000BSG [biosample_summary="Homo sapiens HCT116" and target="SIN3A"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSG [6.26, 395]
n
9,576,667
mean
40.9
sd
28.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 95766670.30% 25491
chr1 1008291 0.41% 2752
chr2 771887 0.32% 2048
chr3 604170 0.30% 1619
chr4 456127 0.24% 1191
chr5 432505 0.24% 1126
chr6 629993 0.37% 1691
chr7 456374 0.29% 1179
chr8 464899 0.32% 1247
chr9 340852 0.25% 923
chr10 490975 0.37% 1288
chr11 472212 0.35% 1266
chr12 585044 0.44% 1596
chr13 130627 0.11% 338
chr14 279439 0.26% 768
chr15 261464 0.26% 668
chr16 330499 0.37% 889
chr17 626581 0.75% 1675
chr18 148590 0.18% 385
chr19 482565 0.82% 1280
chr20 230517 0.36% 596
chr21 49472 0.11% 128
chr22 178774 0.35% 468
chrX 144810 0.09% 370
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25491 3 599 375.69 352
global segment-length histogram

Files

Filename Size md5
ENCFF493SWH.bed.gz 360.18 KB d046aa0f3062164f6d5acc64a7129774
ENCFF493SWH.tabix.bed.gz 290.82 KB c2581c72f64cc396c6bc5bd3733aa2e0
ENCFF493SWH.tabix.bed.gz.tbi 111.76 KB 0cea2b8fb7c8524948c4a11596770daf
genomic_resource.yaml 2.06 KB d0a36fb3fd354cc91c2d55494471bfc5
statistics/