Resource
| Id | TF_ChIP-seq/ENCSR000BSF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSF [biosample_summary="Homo sapiens HCT116" and target="SP1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN637NPO|/analyses/ENCAN637NPO/} has in progress subobject document {0dc23eac-5a91-4db7-aeb2-8eedf7f3b4cd|/documents/0dc23eac-5a91-4db7-aeb2-8eedf7f3b4cd/} audit_internal_action: Released analysis {ENCAN637NPO|/analyses/ENCAN637NPO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF182BZO|/files/ENCFF182BZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18026846 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSF | float |
TF_ChIP-seq_ENCSR000BSF |
TF_ChIP-seq ENCSR000BSF [biosample_summary="Homo sapiens HCT116" and target="SP1"]
|
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[5.82, 516] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11716566 | 0.36% | 33944 |
| chr1 | 1169114 | 0.47% | 3459 |
| chr2 | 978467 | 0.40% | 2839 |
| chr3 | 737000 | 0.37% | 2135 |
| chr4 | 656798 | 0.35% | 1900 |
| chr5 | 561683 | 0.31% | 1604 |
| chr6 | 818698 | 0.48% | 2407 |
| chr7 | 596222 | 0.37% | 1689 |
| chr8 | 548431 | 0.38% | 1626 |
| chr9 | 415652 | 0.30% | 1206 |
| chr10 | 612707 | 0.46% | 1770 |
| chr11 | 566300 | 0.42% | 1627 |
| chr12 | 671170 | 0.50% | 1959 |
| chr13 | 189060 | 0.17% | 532 |
| chr14 | 327884 | 0.31% | 962 |
| chr15 | 316946 | 0.31% | 871 |
| chr16 | 361669 | 0.40% | 1039 |
| chr17 | 619547 | 0.74% | 1780 |
| chr18 | 201255 | 0.25% | 590 |
| chr19 | 566701 | 0.97% | 1707 |
| chr20 | 290641 | 0.45% | 821 |
| chr21 | 70449 | 0.15% | 198 |
| chr22 | 205409 | 0.40% | 583 |
| chrX | 234327 | 0.15% | 639 |
| chrY | 436 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33944 | 1 | 770 | 345.17 | 436 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF600MKH.bed.gz | 517.9 KB | bcc3d0fff72583585f282f1a7270fc8e |
| ENCFF600MKH.tabix.bed.gz | 394.57 KB | f667153b6e0e21161acbe55640374d9c |
| ENCFF600MKH.tabix.bed.gz.tbi | 175.9 KB | 8a0502138478f425a1f55bd5aafb06c7 |
| genomic_resource.yaml | 2.05 KB | c1f7e46e87a14ae609454c047906dae4 |
| statistics/ |
