TF_ChIP-seq_ENCSR000BSB
TF_ChIP-seq ENCSR000BSB [biosample_summary="Homo sapiens HCT116" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR000BSB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BSB [biosamplesummary="Homo sapiens HCT116" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN144PCH|/analyses/ENCAN144PCH/} has in progress subobject document {aebfcef7-5387-4027-9168-22ddf593718c|/documents/aebfcef7-5387-4027-9168-22ddf593718c/} audit_internal_action: Released analysis {ENCAN144PCH|/analyses/ENCAN144PCH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF973DXN|/files/ENCFF973DXN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16137316 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RAD21-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF761EMD|/files/ENCFF761EMD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSB | float |
TF_ChIP-seq_ENCSR000BSB |
TF_ChIP-seq ENCSR000BSB [biosample_summary="Homo sapiens HCT116" and target="RAD21"]
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[4.4, 606] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF391AAM.bed.gz | 847.98 KB | 66f1c23ae099104ebeadb25e9257d6da |
| ENCFF391AAM.bed.gz.dvc | 100.0 B | d7f110dde2ef9fb1f74df2722ed93a04 |
| ENCFF391AAM.tabix.bed.gz | 612.36 KB | 6288a65111729bf2caf7d937ecb4c0a0 |
| ENCFF391AAM.tabix.bed.gz.dvc | 106.0 B | eb235d531f10d60d0882f8763c3f5515 |
| ENCFF391AAM.tabix.bed.gz.tbi | 311.98 KB | 396b43142b32c11dfa90addc85a19b54 |
| ENCFF391AAM.tabix.bed.gz.tbi.dvc | 110.0 B | f250f412affd664a73257c765ebbc089 |
| genomic_resource.yaml | 2.73 KB | c540214eb7948245dd9591dc514fce26 |
| genomic_resource_original.yaml | 2.64 KB | cfc2b85a21324dffa88918f12df15400 |
| statistics/ |