Resource

Id TF_ChIP-seq/ENCSR000BRZcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRZ [biosample_summary="Homo sapiens HCT116" and target="EGR1"]
Description
Labels
  • accession: ENCSR000BRZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:37.582422+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BRZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: EGR1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRZ float

TF_ChIP-seq_ENCSR000BRZ

TF_ChIP-seq ENCSR000BRZ [biosample_summary="Homo sapiens HCT116" and target="EGR1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRZ [4.48, 728]
n
5,869,087
mean
56.5
sd
68.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58690870.18% 17376
chr1 639627 0.26% 1905
chr2 474134 0.20% 1412
chr3 352244 0.18% 1048
chr4 265819 0.14% 763
chr5 266835 0.15% 786
chr6 381910 0.22% 1148
chr7 301802 0.19% 909
chr8 244754 0.17% 713
chr9 197596 0.14% 576
chr10 291994 0.22% 891
chr11 298779 0.22% 893
chr12 334909 0.25% 1003
chr13 99119 0.09% 288
chr14 167384 0.16% 495
chr15 141525 0.14% 405
chr16 201328 0.22% 602
chr17 361041 0.43% 1095
chr18 82134 0.10% 238
chr19 376668 0.64% 1103
chr20 142608 0.22% 404
chr21 32394 0.07% 95
chr22 116918 0.23% 328
chrX 97565 0.06% 276
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17376 1 623 337.77 338.5
global segment-length histogram

Files

Filename Size md5
ENCFF822VKJ.bed.gz 263.97 KB 4b9821a3e4f6b7ff9786a9a9558dc7e7
ENCFF822VKJ.tabix.bed.gz 201.94 KB e055800d8fc912553525458957ad5a20
ENCFF822VKJ.tabix.bed.gz.tbi 102.04 KB 1cf5859664fedcb4cc2c517d7ff132ab
genomic_resource.yaml 1.84 KB b89f514d255c6b6d9f67b31e2263ca3e
statistics/