Resource

Id TF_ChIP-seq/ENCSR000BRTcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRT [biosample_summary="Homo sapiens K562" and target="CBX3"]
Description
Labels
  • accession: ENCSR000BRT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2013-09-13T16:00:04.938279-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: CBX3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRT float

TF_ChIP-seq_ENCSR000BRT

TF_ChIP-seq ENCSR000BRT [biosample_summary="Homo sapiens K562" and target="CBX3"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRT [8.24, 343]
n
8,926,485
mean
48.7
sd
26.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89264850.28% 27231
chr1 1238989 0.50% 3822
chr2 670905 0.28% 2061
chr3 556918 0.28% 1709
chr4 310323 0.16% 939
chr5 425683 0.23% 1317
chr6 789831 0.46% 2458
chr7 709944 0.45% 2214
chr8 343260 0.24% 1034
chr9 281148 0.20% 854
chr10 362640 0.27% 1086
chr11 488743 0.36% 1500
chr12 427286 0.32% 1279
chr13 64390 0.06% 199
chr14 130759 0.12% 382
chr15 234337 0.23% 729
chr16 335201 0.37% 999
chr17 353876 0.43% 1048
chr18 103911 0.13% 314
chr19 546925 0.93% 1639
chr20 190555 0.30% 562
chr21 89433 0.19% 281
chr22 134873 0.27% 401
chrX 136555 0.09% 404
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27231 1 810 327.81 430
global segment-length histogram

Files

Filename Size md5
ENCFF386ZWO.bed.gz 451.81 KB c74490c82289504baef23da490560cd4
ENCFF386ZWO.tabix.bed.gz 314.74 KB 17691a4e96c22120f92371927c081fef
ENCFF386ZWO.tabix.bed.gz.tbi 148.92 KB 38f6a1e56854a8c45f66ed4d17b7c0d3
genomic_resource.yaml 1.87 KB 2fffdc086f3b7b461a9e32c66b41c855
statistics/