TF_ChIP-seq_ENCSR000BRS
TF_ChIP-seq ENCSR000BRS [biosample_summary="Homo sapiens K562" and target="NR2F2"]
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| Id: | TF_ChIP-seq/ENCSR000BRS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BRS [biosamplesummary="Homo sapiens K562" and target="NR2F2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN573LNZ|/analyses/ENCAN573LNZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF422ZRF|/files/ENCFF422ZRF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17189903 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR2F2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422ZRF|/files/ENCFF422ZRF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422ZRF|/files/ENCFF422ZRF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRS | float |
TF_ChIP-seq_ENCSR000BRS |
TF_ChIP-seq ENCSR000BRS [biosample_summary="Homo sapiens K562" and target="NR2F2"]
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[7.7, 562] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF255EOB.bed.gz | 350.68 KB | 261091a7cd8dcdf58adf98e3c6d32d2b |
| ENCFF255EOB.bed.gz.dvc | 100.0 B | 41c9f80d37c2c9c8100d1f685d9723bd |
| ENCFF255EOB.tabix.bed.gz | 266.25 KB | dbf85a660bbddfab01b5ed631f9debc0 |
| ENCFF255EOB.tabix.bed.gz.dvc | 106.0 B | 62f588ff8b78800a806f719438234bd5 |
| ENCFF255EOB.tabix.bed.gz.tbi | 129.89 KB | c9279e5f59aa2afadb087d9c2bcd8347 |
| ENCFF255EOB.tabix.bed.gz.tbi.dvc | 110.0 B | 836bb9ab02911496c26f222dc6837ec6 |
| genomic_resource.yaml | 3.14 KB | 8332127529d32a8a6c3890e3ad519b38 |
| genomic_resource_original.yaml | 3.04 KB | 59ca616254da3407b2b568f34768b8c9 |
| statistics/ |