Resource
| Id | TF_ChIP-seq/ENCSR000BRR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRR [biosample_summary="Homo sapiens K562" and target="STAT5A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN196IUB|/analyses/ENCAN196IUB/} has in progress subobject document {24e0e6bd-bfbb-4fcd-a9c4-6234f0f634e6|/documents/24e0e6bd-bfbb-4fcd-a9c4-6234f0f634e6/} audit_internal_action: Released analysis {ENCAN196IUB|/analyses/ENCAN196IUB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF187BVL|/files/ENCFF187BVL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 2.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRR | float |
TF_ChIP-seq_ENCSR000BRR |
TF_ChIP-seq ENCSR000BRR [biosample_summary="Homo sapiens K562" and target="STAT5A"]
|
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[7.08, 599] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3904856 | 0.12% | 13786 |
| chr1 | 516332 | 0.21% | 1832 |
| chr2 | 288354 | 0.12% | 1028 |
| chr3 | 244565 | 0.12% | 852 |
| chr4 | 171443 | 0.09% | 596 |
| chr5 | 197410 | 0.11% | 694 |
| chr6 | 364569 | 0.21% | 1275 |
| chr7 | 260659 | 0.16% | 917 |
| chr8 | 163747 | 0.11% | 568 |
| chr9 | 120135 | 0.09% | 440 |
| chr10 | 161765 | 0.12% | 577 |
| chr11 | 188888 | 0.14% | 677 |
| chr12 | 188228 | 0.14% | 645 |
| chr13 | 68920 | 0.06% | 244 |
| chr14 | 70523 | 0.07% | 239 |
| chr15 | 110798 | 0.11% | 392 |
| chr16 | 111774 | 0.12% | 401 |
| chr17 | 165559 | 0.20% | 572 |
| chr18 | 62875 | 0.08% | 220 |
| chr19 | 129092 | 0.22% | 458 |
| chr20 | 87236 | 0.14% | 306 |
| chr21 | 48237 | 0.10% | 176 |
| chr22 | 84786 | 0.17% | 313 |
| chrX | 98961 | 0.06% | 364 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 13786 | 9 | 747 | 283.25 | 340 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF187BVL.bed.gz | 220.4 KB | abe228df0cb99f1aa79de79b2a7ad86e |
| ENCFF187BVL.tabix.bed.gz | 162.73 KB | effc2cef7335c168a892efe33142e985 |
| ENCFF187BVL.tabix.bed.gz.tbi | 97.46 KB | e38b44e01dea9f7ef10e321bbd299128 |
| genomic_resource.yaml | 2.1 KB | fe9cced521952e794992b783fe618200 |
| statistics/ |
