TF_ChIP-seq_ENCSR000BRQ
TF_ChIP-seq ENCSR000BRQ [biosample_summary="Homo sapiens K562" and target="CEBPB"]
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| Id: | TF_ChIP-seq/ENCSR000BRQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BRQ [biosamplesummary="Homo sapiens K562" and target="CEBPB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN203IJU|/analyses/ENCAN203IJU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN203IJU|/analyses/ENCAN203IJU/} has in progress subobject document {06964946-b518-427e-9490-81b8966ee0c4|/documents/06964946-b518-427e-9490-81b8966ee0c4/} audit_not_compliant: Processed alignments file {ENCFF060DRK|/files/ENCFF060DRK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5279535 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF022KBK|/files/ENCFF022KBK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 4.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRQ | float |
TF_ChIP-seq_ENCSR000BRQ |
TF_ChIP-seq ENCSR000BRQ [biosample_summary="Homo sapiens K562" and target="CEBPB"]
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[4.63, 615] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF022KBK.bed.gz | 423.77 KB | 484cc43a6ae9ea4be593fb1aa4157e3c |
| ENCFF022KBK.bed.gz.dvc | 100.0 B | d222201e4ebec177029916c48cad52dc |
| ENCFF022KBK.tabix.bed.gz | 325.83 KB | 4fde2f23bacf66e7dbe1fa9366b131d5 |
| ENCFF022KBK.tabix.bed.gz.dvc | 106.0 B | 8b5b468eec88582950b69736d6d33c0c |
| ENCFF022KBK.tabix.bed.gz.tbi | 171.38 KB | 5351b518d003bef6c1ec467faf4baf54 |
| ENCFF022KBK.tabix.bed.gz.tbi.dvc | 110.0 B | ecf7b2fd289e9c30d58350cb850d67c9 |
| genomic_resource.yaml | 2.61 KB | 68a2c7b32bf6cda29f61f0a112386f83 |
| genomic_resource_original.yaml | 2.51 KB | 9f070ce98287f030fa5340b36e73cc2b |
| statistics/ |