Resource

Id TF_ChIP-seq/ENCSR000BRKcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRK [biosample_summary="Homo sapiens K562" and target="TEAD4"]
Description
Labels
  • accession: ENCSR000BRK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2013-09-13T16:52:08.230017-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TEAD4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRK float

TF_ChIP-seq_ENCSR000BRK
TF_ChIP-seq ENCSR000BRK [biosample_summary="Homo sapiens K562" and target="TEAD4"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRK [7.87, 688]
n
10,737,756
mean
98
sd
108

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 107377560.33% 37400
chr1 1374211 0.55% 4751
chr2 820857 0.34% 2832
chr3 671722 0.34% 2362
chr4 458915 0.24% 1610
chr5 559140 0.31% 1926
chr6 915057 0.54% 3218
chr7 724481 0.45% 2530
chr8 439633 0.30% 1539
chr9 353176 0.26% 1241
chr10 463869 0.35% 1608
chr11 566748 0.42% 1963
chr12 536939 0.40% 1878
chr13 130176 0.11% 461
chr14 214651 0.20% 752
chr15 321934 0.32% 1110
chr16 325973 0.36% 1125
chr17 464451 0.56% 1619
chr18 176578 0.22% 625
chr19 420533 0.72% 1454
chr20 240448 0.37% 827
chr21 135295 0.29% 469
chr22 170194 0.33% 591
chrX 252775 0.16% 909
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37400 2 1447 287.11 346
global segment-length histogram

Files

Filename Size md5
ENCFF501XJP.bed.gz 578.82 KB e74e062134ae8d4f9cf12034dcfb7ea1
ENCFF501XJP.tabix.bed.gz 437.53 KB 4b44fc9d4bec33ce8cd498de93a5bbb3
ENCFF501XJP.tabix.bed.gz.tbi 201.78 KB 5c7a3e74c1d12eeb65e7bab6d8363fac
genomic_resource.yaml 1.55 KB 6bfa1099f9636111d0184e1e683a595d
statistics/