Resource
| Id | TF_ChIP-seq/ENCSR000BRI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRI [biosample_summary="Homo sapiens GM12878" and target="RUNX3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN188KXJ|/analyses/ENCAN188KXJ/} has in progress subobject document {7598f7b5-aca6-477f-b298-08d7bbe96900|/documents/7598f7b5-aca6-477f-b298-08d7bbe96900/} audit_internal_action: Released analysis {ENCAN188KXJ|/analyses/ENCAN188KXJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRI | float |
TF_ChIP-seq_ENCSR000BRI |
TF_ChIP-seq ENCSR000BRI [biosample_summary="Homo sapiens GM12878" and target="RUNX3"]
|
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[7.94, 635] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 21029030 | 0.65% | 73579 |
| chr1 | 1935389 | 0.78% | 6737 |
| chr2 | 1713308 | 0.71% | 5974 |
| chr3 | 1454852 | 0.73% | 5118 |
| chr4 | 935002 | 0.49% | 3245 |
| chr5 | 1158056 | 0.64% | 4067 |
| chr6 | 1451170 | 0.85% | 5072 |
| chr7 | 1032633 | 0.65% | 3577 |
| chr8 | 948319 | 0.65% | 3309 |
| chr9 | 795824 | 0.58% | 2795 |
| chr10 | 1011730 | 0.76% | 3555 |
| chr11 | 962521 | 0.71% | 3392 |
| chr12 | 1153171 | 0.87% | 4037 |
| chr13 | 546269 | 0.48% | 1925 |
| chr14 | 739660 | 0.69% | 2618 |
| chr15 | 676150 | 0.66% | 2369 |
| chr16 | 723694 | 0.80% | 2508 |
| chr17 | 910543 | 1.09% | 3240 |
| chr18 | 441115 | 0.55% | 1544 |
| chr19 | 793283 | 1.35% | 2757 |
| chr20 | 536250 | 0.83% | 1879 |
| chr21 | 205046 | 0.44% | 704 |
| chr22 | 390559 | 0.77% | 1371 |
| chrX | 514486 | 0.33% | 1786 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73579 | 1 | 1371 | 285.8 | 324 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF346JDW.bed.gz | 1.2 MB | bd42860f9067e3e77f4b9fdf8e4e7abb |
| ENCFF346JDW.tabix.bed.gz | 855.65 KB | b433b99673e83484741efad4cf2e7aaa |
| ENCFF346JDW.tabix.bed.gz.tbi | 307.84 KB | 49b5b5a80978785c03cef5edb3b142d2 |
| genomic_resource.yaml | 1.56 KB | ed34b177a582275acdaa26de042ea299 |
| statistics/ |
