Resource

Id TF_ChIP-seq/ENCSR000BRIcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRI [biosample_summary="Homo sapiens GM12878" and target="RUNX3"]
Description
Labels
  • accession: ENCSR000BRI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:52:08.652955-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: RUNX3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRI float

TF_ChIP-seq_ENCSR000BRI

TF_ChIP-seq ENCSR000BRI [biosample_summary="Homo sapiens GM12878" and target="RUNX3"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRI [7.94, 635]
n
21,029,030
mean
96.9
sd
91.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 210290300.65% 73579
chr1 1935389 0.78% 6737
chr2 1713308 0.71% 5974
chr3 1454852 0.73% 5118
chr4 935002 0.49% 3245
chr5 1158056 0.64% 4067
chr6 1451170 0.85% 5072
chr7 1032633 0.65% 3577
chr8 948319 0.65% 3309
chr9 795824 0.58% 2795
chr10 1011730 0.76% 3555
chr11 962521 0.71% 3392
chr12 1153171 0.87% 4037
chr13 546269 0.48% 1925
chr14 739660 0.69% 2618
chr15 676150 0.66% 2369
chr16 723694 0.80% 2508
chr17 910543 1.09% 3240
chr18 441115 0.55% 1544
chr19 793283 1.35% 2757
chr20 536250 0.83% 1879
chr21 205046 0.44% 704
chr22 390559 0.77% 1371
chrX 514486 0.33% 1786
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73579 1 1371 285.8 324
global segment-length histogram

Files

Filename Size md5
ENCFF346JDW.bed.gz 1.2 MB bd42860f9067e3e77f4b9fdf8e4e7abb
ENCFF346JDW.tabix.bed.gz 855.65 KB b433b99673e83484741efad4cf2e7aaa
ENCFF346JDW.tabix.bed.gz.tbi 307.84 KB 49b5b5a80978785c03cef5edb3b142d2
genomic_resource.yaml 1.56 KB ed34b177a582275acdaa26de042ea299
statistics/