Resource

Id TF_ChIP-seq/ENCSR000BQZcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQZ [biosample_summary="Homo sapiens GM12878" and target="STAT5A"]
Description
Labels
  • accession: ENCSR000BQZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:02:31.391113-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: STAT5A

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQZ float

TF_ChIP-seq_ENCSR000BQZ
TF_ChIP-seq ENCSR000BQZ [biosample_summary="Homo sapiens GM12878" and target="STAT5A"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQZ [9.86, 334]
n
5,591,718
mean
45.3
sd
20.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55917180.17% 13236
chr1 542160 0.22% 1291
chr2 430039 0.18% 982
chr3 385282 0.19% 939
chr4 224995 0.12% 533
chr5 304702 0.17% 724
chr6 431196 0.25% 1011
chr7 243761 0.15% 576
chr8 234867 0.16% 567
chr9 201142 0.15% 475
chr10 226800 0.17% 533
chr11 272943 0.20% 629
chr12 319051 0.24% 781
chr13 125282 0.11% 281
chr14 194631 0.18% 443
chr15 195674 0.19% 474
chr16 208958 0.23% 482
chr17 293065 0.35% 685
chr18 93983 0.12% 228
chr19 274314 0.47% 682
chr20 131366 0.20% 309
chr21 76072 0.16% 172
chr22 108897 0.21% 272
chrX 72538 0.05% 167
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13236 1 2770 422.46 404.5
global segment-length histogram

Files

Filename Size md5
ENCFF492YMU.bed.gz 194.24 KB c5f6d5dee5e25313d5e5dd85604244b8
ENCFF492YMU.tabix.bed.gz 153.71 KB 65c0aadbb071dbd111605574205ccb38
ENCFF492YMU.tabix.bed.gz.tbi 75.92 KB 1a27d10ab9782da7c66b0453bae4f4ac
genomic_resource.yaml 1.35 KB fd2960103dd5fda6b6311117dde0f629
statistics/